It bothered me as well. Having ridden a loaded Trek 520 for years there is ALWAYS gonna be some sway because the load changes the center of gravity but the amount of sway with a loaded Q45 made me uncomfortable. My solution was to lower the rack, and learn to pack a little lighter as well

.
I detached the rack from it's stays, loosened the stays' connections to the frame and pushed everything down- being careful not to lower it far enough to get into the tire (or fender in my case) when the shock is fully compressed. Then I leveled the rack platform and cut a short piece of aluminum bar to bridge the gap from the stay to the connection point at the rear of the rack. Pics attached- the first shows the rack in it's lower position- I think I dropped it down about 4 inches in total; the second is a picture of the short length of aluminum bar required to connect the rack stay to the leveled platform; and the third pic is a bonus because the thread mention fender stability which I ALSO found to be an issue.
This was also a bit tricky but it works very well. The first photo shows a second fender stay I attached toward the front of the fender. It terminates on the same braze-on as the rear stay, which you can see in the third pic. This of course requires a longer screw and an additional stay clamp, both of which I had on hand as they came with my Velo Orange fenders. The other thing I did was cut about 4" of fender length off so when installed I had a reasonable amount of ground clearance at the back of the wheel. With a full coverage fender it drug frequently rolling off a curb.
Hope this helps- both these mods worked very well for me.